----------Julia and Package versions---------- Julia Version 1.0.0 Commit 5d4eaca0c9 (2018-08-08 20:58 UTC) Platform Info: OS: Linux (x86_64-pc-linux-gnu) CPU: Intel(R) Xeon(R) CPU E5-2673 v3 @ 2.40GHz WORD_SIZE: 64 LIBM: libopenlibm LLVM: libLLVM-6.0.0 (ORCJIT, haswell) Status `~/.julia/environments/v1.0/Project.toml` [dfba38dd] BHAtp v0.1.0 ----------STDOUT---------- Get:1 http://cran.rstudio.com/bin/linux/ubuntu xenial/ InRelease [3590 B] Get:2 http://cran.rstudio.com/bin/linux/ubuntu xenial/ Packages [134 kB] Get:3 http://security.ubuntu.com/ubuntu xenial-security InRelease [107 kB] Hit:4 http://ppa.launchpad.net/openjdk-r/ppa/ubuntu xenial InRelease Hit:5 http://archive.ubuntu.com/ubuntu xenial InRelease Get:6 http://archive.ubuntu.com/ubuntu xenial-updates InRelease [109 kB] Get:7 http://security.ubuntu.com/ubuntu xenial-security/universe Sources [93.8 kB] Get:8 http://archive.ubuntu.com/ubuntu xenial-backports InRelease [107 kB] Get:9 http://security.ubuntu.com/ubuntu xenial-security/main amd64 Packages [709 kB] Get:10 http://archive.ubuntu.com/ubuntu xenial-updates/universe Sources [280 kB] Get:11 http://archive.ubuntu.com/ubuntu xenial-updates/main amd64 Packages [1097 kB] Get:12 http://security.ubuntu.com/ubuntu xenial-security/universe amd64 Packages [481 kB] Get:13 http://security.ubuntu.com/ubuntu xenial-security/multiverse amd64 Packages [3744 B] Get:14 http://archive.ubuntu.com/ubuntu xenial-updates/universe amd64 Packages [889 kB] Get:15 http://archive.ubuntu.com/ubuntu xenial-updates/multiverse amd64 Packages [18.8 kB] Get:16 http://archive.ubuntu.com/ubuntu xenial-backports/universe amd64 Packages [8256 B] Fetched 4042 kB in 1s (3335 kB/s) Reading package lists... Cloning default registries into /home/jrun/BHAtp/.julia/registries Cloning registry General from "https://github.com/JuliaRegistries/General.git" [?25l Fetching: [> ] 0.0 % [?25h Updating registry at `~/.julia/registries/General` Updating git-repo `https://github.com/JuliaRegistries/General.git` [?25l[?25h Resolving package versions... Installed TableTraits ───────────────── v0.3.1 Installed DataStructures ────────────── v0.14.0 Installed Colors ────────────────────── v0.9.4 Installed BinaryProvider ────────────── v0.5.0 Installed DocStringExtensions ───────── v0.5.0 Installed DataStreams ───────────────── v0.4.1 Installed FixedPointNumbers ─────────── v0.5.3 Installed BHAtp ─────────────────────── v0.1.0 Installed CodecZlib ─────────────────── v0.5.0 Installed Requires ──────────────────── v0.5.2 Installed Ratios ────────────────────── v0.3.0 Installed AxisAlgorithms ────────────── v0.3.0 Installed NaNMath ───────────────────── v0.3.2 Installed Compat ────────────────────── v1.2.0 Installed CategoricalArrays ─────────── v0.4.0 Installed Interpolations ────────────── v0.9.2 Installed JSON ──────────────────────── v0.19.0 Installed Showoff ───────────────────── v0.2.1 Installed Missings ──────────────────── v0.3.1 Installed WeakRefStrings ────────────── v0.5.3 Installed DataFrames ────────────────── v0.14.0 Installed RecipesBase ───────────────── v0.6.0 Installed Plots ─────────────────────── v0.20.4 Installed PlotUtils ─────────────────── v0.5.4 Installed OffsetArrays ──────────────── v0.8.1 Installed Tables ────────────────────── v0.1.8 Installed Measures ──────────────────── v0.3.0 Installed SortingAlgorithms ─────────── v0.3.1 Installed Documenter ────────────────── v0.19.6 Installed IteratorInterfaceExtensions ─ v0.1.1 Installed CustomUnitRanges ──────────── v0.2.0 Installed WoodburyMatrices ──────────── v0.4.1 Installed ColorTypes ────────────────── v0.7.5 Installed Reexport ──────────────────── v0.2.0 Installed QuadGK ────────────────────── v2.0.2 Installed TranscodingStreams ────────── v0.8.1 Installed PlotThemes ────────────────── v0.3.0 Installed StatsBase ─────────────────── v0.25.0 Installed PtFEM ─────────────────────── v1.0.0 Installed OrderedCollections ────────── v1.0.2 Installed GR ────────────────────────── v0.34.1 Installed StaticArrays ──────────────── v0.8.3 Installed Contour ───────────────────── v0.5.1 Updating `~/.julia/environments/v1.0/Project.toml` [dfba38dd] + BHAtp v0.1.0 Updating `~/.julia/environments/v1.0/Manifest.toml` [13072b0f] + AxisAlgorithms v0.3.0 [dfba38dd] + BHAtp v0.1.0 [b99e7846] + BinaryProvider v0.5.0 [324d7699] + CategoricalArrays v0.4.0 [944b1d66] + CodecZlib v0.5.0 [3da002f7] + ColorTypes v0.7.5 [5ae59095] + Colors v0.9.4 [34da2185] + Compat v1.2.0 [d38c429a] + Contour v0.5.1 [dc8bdbbb] + CustomUnitRanges v0.2.0 [a93c6f00] + DataFrames v0.14.0 [9a8bc11e] + DataStreams v0.4.1 [864edb3b] + DataStructures v0.14.0 [ffbed154] + DocStringExtensions v0.5.0 [e30172f5] + Documenter v0.19.6 [53c48c17] + FixedPointNumbers v0.5.3 [28b8d3ca] + GR v0.34.1 [a98d9a8b] + Interpolations v0.9.2 [82899510] + IteratorInterfaceExtensions v0.1.1 [682c06a0] + JSON v0.19.0 [442fdcdd] + Measures v0.3.0 [e1d29d7a] + Missings v0.3.1 [77ba4419] + NaNMath v0.3.2 [6fe1bfb0] + OffsetArrays v0.8.1 [bac558e1] + OrderedCollections v1.0.2 [ccf2f8ad] + PlotThemes v0.3.0 [995b91a9] + PlotUtils v0.5.4 [91a5bcdd] + Plots v0.20.4 [9b64898b] + PtFEM v1.0.0 [1fd47b50] + QuadGK v2.0.2 [c84ed2f1] + Ratios v0.3.0 [3cdcf5f2] + RecipesBase v0.6.0 [189a3867] + Reexport v0.2.0 [ae029012] + Requires v0.5.2 [992d4aef] + Showoff v0.2.1 [a2af1166] + SortingAlgorithms v0.3.1 [90137ffa] + StaticArrays v0.8.3 [2913bbd2] + StatsBase v0.25.0 [3783bdb8] + TableTraits v0.3.1 [bd369af6] + Tables v0.1.8 [3bb67fe8] + TranscodingStreams v0.8.1 [ea10d353] + WeakRefStrings v0.5.3 [efce3f68] + WoodburyMatrices v0.4.1 [2a0f44e3] + Base64 [ade2ca70] + Dates [8bb1440f] + DelimitedFiles [8ba89e20] + Distributed [9fa8497b] + Future [b77e0a4c] + InteractiveUtils [76f85450] + LibGit2 [8f399da3] + Libdl [37e2e46d] + LinearAlgebra [56ddb016] + Logging [d6f4376e] + Markdown [a63ad114] + Mmap [44cfe95a] + Pkg [de0858da] + Printf [3fa0cd96] + REPL [9a3f8284] + Random [ea8e919c] + SHA [9e88b42a] + Serialization [1a1011a3] + SharedArrays [6462fe0b] + Sockets [2f01184e] + SparseArrays [10745b16] + Statistics [4607b0f0] + SuiteSparse [8dfed614] + Test [cf7118a7] + UUIDs [4ec0a83e] + Unicode Building CodecZlib → `~/.julia/packages/CodecZlib/wwgbh/deps/build.log` Building GR ───────→ `~/.julia/packages/GR/joQgG/deps/build.log` Building Plots ────→ `~/.julia/packages/Plots/UtVfv/deps/build.log` Running BottomHoleAssemblyAnalysis/BHatp.jl tests: * ex01.jl * Test when editing in Atom There are 115 equations. BHAtp.jl: Error During Test at /home/jrun/BHAtp/.julia/packages/BHAtp/0EAZi/test/runtests.jl:12 Got exception outside of a @test LoadError: UndefVarError: spzeros not defined Stacktrace: [1] p44_1(::Dict{Symbol,Any}) at /home/jrun/BHAtp/.julia/packages/BHAtp/0EAZi/src/p44_1.jl:208 [2] top-level scope at util.jl:156 [3] include at ./boot.jl:317 [inlined] [4] include_relative(::Module, ::String) at ./loading.jl:1038 [5] include(::Module, ::String) at ./sysimg.jl:29 [6] include(::String) at ./client.jl:388 [7] macro expansion at /home/jrun/BHAtp/.julia/packages/BHAtp/0EAZi/test/runtests.jl:16 [inlined] [8] macro expansion at /buildworker/worker/package_linux64/build/usr/share/julia/stdlib/v1.0/Test/src/Test.jl:1083 [inlined] [9] top-level scope at /home/jrun/BHAtp/.julia/packages/BHAtp/0EAZi/test/runtests.jl:14 [10] include at ./boot.jl:317 [inlined] [11] include_relative(::Module, ::String) at ./loading.jl:1038 [12] include(::Module, ::String) at ./sysimg.jl:29 [13] include(::String) at ./client.jl:388 [14] top-level scope at none:0 [15] eval(::Module, ::Any) at ./boot.jl:319 [16] macro expansion at ./logging.jl:317 [inlined] [17] exec_options(::Base.JLOptions) at ./client.jl:219 [18] _start() at ./client.jl:421 in expression starting at /home/jrun/BHAtp/.julia/packages/BHAtp/0EAZi/test/test_ex01.jl:33 Test Summary: | Error Total BHAtp.jl | 1 1 Testing BHAtp Status `/tmp/tmpjc0eZF/Manifest.toml` [13072b0f] AxisAlgorithms v0.3.0 [dfba38dd] BHAtp v0.1.0 [b99e7846] BinaryProvider v0.5.0 [324d7699] CategoricalArrays v0.4.0 [944b1d66] CodecZlib v0.5.0 [3da002f7] ColorTypes v0.7.5 [5ae59095] Colors v0.9.4 [34da2185] Compat v1.2.0 [d38c429a] Contour v0.5.1 [dc8bdbbb] CustomUnitRanges v0.2.0 [a93c6f00] DataFrames v0.14.0 [9a8bc11e] DataStreams v0.4.1 [864edb3b] DataStructures v0.14.0 [ffbed154] DocStringExtensions v0.5.0 [e30172f5] Documenter v0.19.6 [53c48c17] FixedPointNumbers v0.5.3 [28b8d3ca] GR v0.34.1 [a98d9a8b] Interpolations v0.9.2 [82899510] IteratorInterfaceExtensions v0.1.1 [682c06a0] JSON v0.19.0 [442fdcdd] Measures v0.3.0 [e1d29d7a] Missings v0.3.1 [77ba4419] NaNMath v0.3.2 [6fe1bfb0] OffsetArrays v0.8.1 [bac558e1] OrderedCollections v1.0.2 [ccf2f8ad] PlotThemes v0.3.0 [995b91a9] PlotUtils v0.5.4 [91a5bcdd] Plots v0.20.4 [9b64898b] PtFEM v1.0.0 [1fd47b50] QuadGK v2.0.2 [c84ed2f1] Ratios v0.3.0 [3cdcf5f2] RecipesBase v0.6.0 [189a3867] Reexport v0.2.0 [ae029012] Requires v0.5.2 [992d4aef] Showoff v0.2.1 [a2af1166] SortingAlgorithms v0.3.1 [90137ffa] StaticArrays v0.8.3 [2913bbd2] StatsBase v0.25.0 [3783bdb8] TableTraits v0.3.1 [bd369af6] Tables v0.1.8 [3bb67fe8] TranscodingStreams v0.8.1 [ea10d353] WeakRefStrings v0.5.3 [efce3f68] WoodburyMatrices v0.4.1 [2a0f44e3] Base64 [`/opt/julia-1.0.0/bin/../share/julia/stdlib/v1.0/Base64`] [ade2ca70] Dates [`/opt/julia-1.0.0/bin/../share/julia/stdlib/v1.0/Dates`] [8bb1440f] DelimitedFiles [`/opt/julia-1.0.0/bin/../share/julia/stdlib/v1.0/DelimitedFiles`] [8ba89e20] Distributed [`/opt/julia-1.0.0/bin/../share/julia/stdlib/v1.0/Distributed`] [9fa8497b] Future [`/opt/julia-1.0.0/bin/../share/julia/stdlib/v1.0/Future`] [b77e0a4c] InteractiveUtils [`/opt/julia-1.0.0/bin/../share/julia/stdlib/v1.0/InteractiveUtils`] [76f85450] LibGit2 [`/opt/julia-1.0.0/bin/../share/julia/stdlib/v1.0/LibGit2`] [8f399da3] Libdl [`/opt/julia-1.0.0/bin/../share/julia/stdlib/v1.0/Libdl`] [37e2e46d] LinearAlgebra [`/opt/julia-1.0.0/bin/../share/julia/stdlib/v1.0/LinearAlgebra`] [56ddb016] Logging [`/opt/julia-1.0.0/bin/../share/julia/stdlib/v1.0/Logging`] [d6f4376e] Markdown [`/opt/julia-1.0.0/bin/../share/julia/stdlib/v1.0/Markdown`] [a63ad114] Mmap [`/opt/julia-1.0.0/bin/../share/julia/stdlib/v1.0/Mmap`] [44cfe95a] Pkg [`/opt/julia-1.0.0/bin/../share/julia/stdlib/v1.0/Pkg`] [de0858da] Printf [`/opt/julia-1.0.0/bin/../share/julia/stdlib/v1.0/Printf`] [3fa0cd96] REPL [`/opt/julia-1.0.0/bin/../share/julia/stdlib/v1.0/REPL`] [9a3f8284] Random [`/opt/julia-1.0.0/bin/../share/julia/stdlib/v1.0/Random`] [ea8e919c] SHA [`/opt/julia-1.0.0/bin/../share/julia/stdlib/v1.0/SHA`] [9e88b42a] Serialization [`/opt/julia-1.0.0/bin/../share/julia/stdlib/v1.0/Serialization`] [1a1011a3] SharedArrays [`/opt/julia-1.0.0/bin/../share/julia/stdlib/v1.0/SharedArrays`] [6462fe0b] Sockets [`/opt/julia-1.0.0/bin/../share/julia/stdlib/v1.0/Sockets`] [2f01184e] SparseArrays [`/opt/julia-1.0.0/bin/../share/julia/stdlib/v1.0/SparseArrays`] [10745b16] Statistics [`/opt/julia-1.0.0/bin/../share/julia/stdlib/v1.0/Statistics`] [4607b0f0] SuiteSparse [`/opt/julia-1.0.0/bin/../share/julia/stdlib/v1.0/SuiteSparse`] [8dfed614] Test [`/opt/julia-1.0.0/bin/../share/julia/stdlib/v1.0/Test`] [cf7118a7] UUIDs [`/opt/julia-1.0.0/bin/../share/julia/stdlib/v1.0/UUIDs`] [4ec0a83e] Unicode [`/opt/julia-1.0.0/bin/../share/julia/stdlib/v1.0/Unicode`] ----------STDERR---------- ┌ Warning: Package BHAtp does not have DataFrames in its dependencies: │ - If you have BHAtp checked out for development and have │ added DataFrames as a dependency but haven't updated your primary │ environment's manifest file, try `Pkg.resolve()`. │ - Otherwise you may need to report an issue with BHAtp └ Loading DataFrames into BHAtp from project dependency, future warnings for BHAtp are suppressed. ERROR: LoadError: Some tests did not pass: 0 passed, 0 failed, 1 errored, 0 broken. in expression starting at /home/jrun/BHAtp/.julia/packages/BHAtp/0EAZi/test/runtests.jl:12 ERROR: Package BHAtp errored during testing Stacktrace: [1] pkgerror(::String, ::Vararg{String,N} where N) at /buildworker/worker/package_linux64/build/usr/share/julia/stdlib/v1.0/Pkg/src/Types.jl:120 [2] macro expansion at ./logging.jl:313 [inlined] [3] #test#61(::Bool, ::Function, ::Pkg.Types.Context, ::Array{Pkg.Types.PackageSpec,1}) at /buildworker/worker/package_linux64/build/usr/share/julia/stdlib/v1.0/Pkg/src/Operations.jl:1283 [4] #test at ./none:0 [inlined] [5] #test#44(::Bool, ::Base.Iterators.Pairs{Union{},Union{},Tuple{},NamedTuple{(),Tuple{}}}, ::Function, ::Pkg.Types.Context, ::Array{Pkg.Types.PackageSpec,1}) at /buildworker/worker/package_linux64/build/usr/share/julia/stdlib/v1.0/Pkg/src/API.jl:256 [6] #test at ./none:0 [inlined] [7] #test#43 at /buildworker/worker/package_linux64/build/usr/share/julia/stdlib/v1.0/Pkg/src/API.jl:239 [inlined] [8] #test at ./none:0 [inlined] [9] #test#42(::Base.Iterators.Pairs{Symbol,Bool,Tuple{Symbol},NamedTuple{(:coverage,),Tuple{Bool}}}, ::Function, ::Array{String,1}) at /buildworker/worker/package_linux64/build/usr/share/julia/stdlib/v1.0/Pkg/src/API.jl:238 [10] #test at ./none:0 [inlined] [11] #test#41 at /buildworker/worker/package_linux64/build/usr/share/julia/stdlib/v1.0/Pkg/src/API.jl:237 [inlined] [12] (::getfield(Pkg.API, Symbol("#kw##test")))(::NamedTuple{(:coverage,),Tuple{Bool}}, ::typeof(Pkg.API.test), ::String) at ./none:0 [13] top-level scope at none:0